NeuTu
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Eager to try something COOL?
Interested in improving the largest connectome to date by yourself? Here are the instructions!
For any questions, please contact Ting Zhao ([email protected])

Requirements

    Active DVID database that supplies the hemibrain dataset. Visit dvid.io for more instructions.
    A modern Linux/Mac machine with a mainstream Graphics card
      Make sure the machine can connect to the database

Install NeuTu

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curl -X GET https://raw.githubusercontent.com/janelia-flyem/NeuTu/master/neurolabi/shell/setup_neutu.sh > setup_neutu.sh
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bash setup_neutu.sh <install_dir> neutu
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Note: <install_dir> is the path to where NeuTu will be installed. It is preferred to be a non-existing or empty directory.

Start NeuTu

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<install_dir>/bin/neutu
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Load Dataset from DVID

You can follow the instructions from Get Started to open a dataset in NeuTu. You can also copy and paste the following settings to NeuTu after replacing <grayscale_uuid> with the actual grayscale UUID, assuming that the segmentation/synapse data are hosted on localhost:8000 with and the grayscale data are hosted on localhost:8001 with uuid <grayscale_uuid>. For different server addresses, you need to replace the address settings accordingly.
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{
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"address": "localhost",
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"port": 8000,
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"name": "local_test",
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"default": false,
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"segmentation": "segmentation",
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"uuid": "52a1",
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"proofreading": true,
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"synapse": "synapses",
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"supervised": false,
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"@grayscale": [
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{
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"address": "localhost",
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"port": 8001,
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"background": 0,
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"gray_scale": "grayscale",
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"default": false,
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"uuid": "<grayscale_uuid>"
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}
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]
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}
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Paste Settings to Load DVID Dataset
Last modified 1yr ago