# NeuTu

## NeuTu

- [About NeuTu](https://janelia-flyem.gitbook.io/neutu/master.md)
- [Overview](https://janelia-flyem.gitbook.io/neutu/overview-1.md)
- [Get Started](https://janelia-flyem.gitbook.io/neutu/get-started.md)
- [Eager to try something COOL?](https://janelia-flyem.gitbook.io/neutu/get-started/eager-to-try-something-cool.md)
- [Main Windows](https://janelia-flyem.gitbook.io/neutu/main-windows.md)
- [Home Window](https://janelia-flyem.gitbook.io/neutu/main-windows/home-window.md)
- [Main Proofreading Window](https://janelia-flyem.gitbook.io/neutu/main-windows/main-proofreading-window-1.md)
- [Menu bars and drop-down](https://janelia-flyem.gitbook.io/neutu/main-windows/main-proofreading-window-1/menu-bars-and-drop-down.md)
- [3D Windows](https://janelia-flyem.gitbook.io/neutu/main-windows/3d-windows.md)
- [Visualization](https://janelia-flyem.gitbook.io/neutu/2d-proofreading.md)
- [2D Visualization](https://janelia-flyem.gitbook.io/neutu/2d-proofreading/2d-visualization.md)
- [grayscale and segmentation](https://janelia-flyem.gitbook.io/neutu/2d-proofreading/2d-visualization/2d-viewer-for-grayscale-and-segmentation.md)
- [Change Body Color Arbitrarily](https://janelia-flyem.gitbook.io/neutu/2d-proofreading/2d-visualization/2d-viewer-for-grayscale-and-segmentation/change-body-color-arbitrarily.md)
- [Synapses](https://janelia-flyem.gitbook.io/neutu/2d-proofreading/2d-visualization/synapse.md)
- [Copy Information](https://janelia-flyem.gitbook.io/neutu/2d-proofreading/2d-visualization/copy-information.md)
- [3D Visualization](https://janelia-flyem.gitbook.io/neutu/2d-proofreading/3d-window.md)
- [Synapses](https://janelia-flyem.gitbook.io/neutu/2d-proofreading/3d-window/synapse-selection.md)
- [Orthogonal View](https://janelia-flyem.gitbook.io/neutu/2d-proofreading/orthogonal-view.md)
- [Body Proofreading](https://janelia-flyem.gitbook.io/neutu/body-proofreading.md)
- [Body Lock](https://janelia-flyem.gitbook.io/neutu/body-proofreading/intro-to-locking-bodies.md)
- [Correcting False Splits](https://janelia-flyem.gitbook.io/neutu/body-proofreading/correcting-false-splits.md)
- [Correcting False Merges](https://janelia-flyem.gitbook.io/neutu/body-proofreading/correcting-false-merges.md)
- [Annotation](https://janelia-flyem.gitbook.io/neutu/annotation.md)
- [Body Annotations](https://janelia-flyem.gitbook.io/neutu/annotation/body-annotations.md)
- [Bookmarks](https://janelia-flyem.gitbook.io/neutu/annotation/bookmarks.md)
- [Todo Annotation](https://janelia-flyem.gitbook.io/neutu/annotation/todo-annotation.md)
- [Synapse Annotation](https://janelia-flyem.gitbook.io/neutu/annotation/synapse-annotation.md)
- [ROI](https://janelia-flyem.gitbook.io/neutu/roi.md)
- [Create ROIs from Scratch](https://janelia-flyem.gitbook.io/neutu/roi/create-rois-from-scratch.md)
- [Hot Keys](https://janelia-flyem.gitbook.io/neutu/hot-keys.md)
- [Sequencer](https://janelia-flyem.gitbook.io/neutu/sequencer.md)
- [Body Coloring](https://janelia-flyem.gitbook.io/neutu/sequencer/body-coloring.md)
- [Protocols](https://janelia-flyem.gitbook.io/neutu/protocols.md)
- [Connection Validation](https://janelia-flyem.gitbook.io/neutu/protocols/connection-validation.md)
- [Measuring tool](https://janelia-flyem.gitbook.io/neutu/measuring-tool.md)
- [Settings](https://janelia-flyem.gitbook.io/neutu/settings.md)
- [Local Configuration](https://janelia-flyem.gitbook.io/neutu/settings/configurations.md)
- [Meta Configuration in DVID](https://janelia-flyem.gitbook.io/neutu/settings/meta-data-stored-in-dvid.md)
- [Command Line Options](https://janelia-flyem.gitbook.io/neutu/settings/command-line-options.md)
- [Miscellaneous](https://janelia-flyem.gitbook.io/neutu/miscellaneous.md)
- [DVID Data](https://janelia-flyem.gitbook.io/neutu/miscellaneous/dvid-data.md)
- [Neuroglancer](https://janelia-flyem.gitbook.io/neutu/neuroglancer.md)
- [Refresh](https://janelia-flyem.gitbook.io/neutu/neuroglancer/refresh.md)
- [Annotations](https://janelia-flyem.gitbook.io/neutu/neuroglancer/annotations.md)
- [Update Controls for Annotation Rendering](https://janelia-flyem.gitbook.io/neutu/neuroglancer/annotations/update-controls-for-annotation-rendering.md)
- [Import local annotations](https://janelia-flyem.gitbook.io/neutu/neuroglancer/annotations/import-local-annotations.md)